sessionInfo()
#> R version 4.5.2 (2025-10-31)
#> Platform: aarch64-apple-darwin20
#> Running under: macOS Tahoe 26.1
#>
#> Matrix products: default
#> BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
#>
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#>
#> time zone: Europe/Berlin
#> tzcode source: internal
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets
#> [6] methods base
#>
#> other attached packages:
#> [1] patchwork_1.3.2 ggplot2_4.0.1 SCpubr_3.0.1
#> [4] Seurat_5.4.0 SeuratObject_5.3.0 sp_2.2-0
#>
#> loaded via a namespace (and not attached):
#> [1] deldir_2.0-4 pbapply_1.7-4
#> [3] gridExtra_2.3 rlang_1.1.6
#> [5] magrittr_2.0.4 RcppAnnoy_0.0.22
#> [7] otel_0.2.0 spatstat.geom_3.6-1
#> [9] matrixStats_1.5.0 ggridges_0.5.7
#> [11] compiler_4.5.2 png_0.1-8
#> [13] vctrs_0.6.5 reshape2_1.4.5
#> [15] stringr_1.6.0 pkgconfig_2.0.3
#> [17] fastmap_1.2.0 promises_1.5.0
#> [19] rmarkdown_2.30 purrr_1.2.0
#> [21] xfun_0.55 jsonlite_2.0.0
#> [23] goftest_1.2-3 later_1.4.4
#> [25] spatstat.utils_3.2-0 irlba_2.3.5.1
#> [27] parallel_4.5.2 cluster_2.1.8.1
#> [29] R6_2.6.1 ica_1.0-3
#> [31] stringi_1.8.7 RColorBrewer_1.1-3
#> [33] spatstat.data_3.1-9 reticulate_1.44.1
#> [35] parallelly_1.46.0 spatstat.univar_3.1-5
#> [37] lmtest_0.9-40 scattermore_1.2
#> [39] Rcpp_1.1.0 knitr_1.51
#> [41] tensor_1.5.1 future.apply_1.20.1
#> [43] zoo_1.8-15 sctransform_0.4.2
#> [45] httpuv_1.6.16 Matrix_1.7-4
#> [47] splines_4.5.2 igraph_2.2.1
#> [49] tidyselect_1.2.1 rstudioapi_0.17.1
#> [51] abind_1.4-8 yaml_2.3.12
#> [53] spatstat.random_3.4-3 codetools_0.2-20
#> [55] miniUI_0.1.2 spatstat.explore_3.6-0
#> [57] listenv_0.10.0 lattice_0.22-7
#> [59] tibble_3.3.0 plyr_1.8.9
#> [61] withr_3.0.2 shiny_1.12.1
#> [63] S7_0.2.1 ROCR_1.0-11
#> [65] evaluate_1.0.5 Rtsne_0.17
#> [67] future_1.68.0 fastDummies_1.7.5
#> [69] survival_3.8-3 polyclip_1.10-7
#> [71] fitdistrplus_1.2-4 pillar_1.11.1
#> [73] KernSmooth_2.23-26 plotly_4.11.0
#> [75] generics_0.1.4 RcppHNSW_0.6.0
#> [77] scales_1.4.0 globals_0.18.0
#> [79] xtable_1.8-4 glue_1.8.0
#> [81] lazyeval_0.2.2 tools_4.5.2
#> [83] data.table_1.18.0 RSpectra_0.16-2
#> [85] RANN_2.6.2 dotCall64_1.2
#> [87] cowplot_1.2.0 grid_4.5.2
#> [89] tidyr_1.3.2 nlme_3.1-168
#> [91] cli_3.6.5 spatstat.sparse_3.1-0
#> [93] spam_2.11-1 viridisLite_0.4.2
#> [95] dplyr_1.1.4 uwot_0.2.4
#> [97] gtable_0.3.6 digest_0.6.39
#> [99] progressr_0.18.0 ggrepel_0.9.6
#> [101] htmlwidgets_1.6.4 farver_2.1.2
#> [103] htmltools_0.5.9 lifecycle_1.0.4
#> [105] httr_1.4.7 mime_0.13
#> [107] MASS_7.3-65Session info
For reproducibility, here’s the session information used to build this book: