SCpubr
Welcome to SCpubr
Welcome to the official documentation for SCpubr v3.0.0!
SCpubr provides a streamlined way of generating publication-ready plots for Single-Cell transcriptomics data. The goal is simple: create high-quality visualizations with minimal effort that can be used right away in your research articles.
Every SCpubr function is designed so that basic usage requires only a Seurat object and, at most, a few key parameters. Sensible defaults handle the rest. When finer control is needed, each function exposes a rich set of optional parameters for advanced customization — colors, typography, legends, rasterization, and more — documented in the shared features reference.
SCpubr is now in maintenance mode — bug fixes and compatibility updates will continue, but no new features are planned. Community contributions are very welcome! See the contributing guide for how to get involved.
What’s new in v3.0.0?
- 34 functions organized into 6 logical categories
- Colorblind-safe palettes built-in
- Standardized naming across all functions
- Enhanced compatibility with SeuratObject v5
- Text values in heatmaps for better readability
Check the full changelog for details.
Quick links
- Installation guide - Get started in 5 minutes
- Quick start - Your first plots
- Function reference - Browse all functions
- GitHub repository - Source code and issues