Installation guide

To install SCpubr, use the following commands:

# From CRAN - Official release:
install.packages("SCpubr")

# From GitHub - Latest stable development version:
if(!requireNamespace("devtools", quietly = TRUE)){
  install.packages("devtools") # If not installed.
}

devtools::install_github("enblacar/SCpubr", ref = "v3.0.0")

Check your dependencies

SCpubr relies on several packages to run its functions. You can get a full overview of which dependencies are installed and which functions are available using SCpubr::do_PackageReport():

SCpubr::do_PackageReport(extended = TRUE)

This will provide you with:

  • The status of your dependencies (installed or missing).
  • The functions that can be run based on your currently installed dependencies.
  • Packages that require a minimum version will be marked with an exclamation mark if outdated.